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29.1.5 homology — Simple Homology Program

WARNING: This program is out of date with respect to current options in CONGEN.

The program, homology, is a simple sequence homology program which uses the homology finding code in CONGEN, see Matching of Comparison Data. In order to use the program, you must prepare two sequence files as described in Read Sequence, which will be the first requests of the program. Then, the program will ask for conserved residue sets, and you must respond with a set of lines giving residues which are to be considered equivalent. A blank line terminates this section. The program will then compute and report the homology and repeat the questions. You can terminate the program by specifying a blank file name for the first sequence file.