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A.6 DNA Topology Files

The DNA topology files are largely untested. Also, they are not designed to work together with the protein topology files. These deficiencies will hopefully be corrected for version 3 of CONGEN.

A.6.1 RTOPDNA4

Modified version of RTOPDNA3 with charges changed and other changes.

Title in the run:

     *   RESIDUE TOPOLOGY FILE FOR DNA USING EXPLICIT HYDROGEN
     *   ATOMS -- VERSION 4 -- BRB -- 2/13/82

Title in the file:

     *  BROMINATED CYT AND WATER ADDED 10/20/81
     *  RESIDUE TOPOLOGY FILE FOR DNA WITH EXPLICIT HYDROGENS
     *  --  VERSION 4 --  BRB  -- 2/13/82